What It Costs to Replace a Transmission in a 2006 Honda Accord (2025)

Expect to pay roughly $3,300–$5,700 for an automatic and $2,200–$5,000 for a manual in the U.S., as of 2025. The final bill depends on engine (2.4L I4 vs. 3.0L V6), transmission type (5-speed automatic, 5-speed manual, or 6-speed manual on the V6 coupe), whether you choose a remanufactured, rebuilt, used, or new unit, and local labor rates.

What You’ll Likely Pay, By Configuration

The 2006 Accord came with several transmission options, and replacement costs vary notably. Below are realistic price ranges that reflect parts, labor, fluids, and common incidentals in 2025 dollars.

• 5-speed automatic, 2.4L I4 (most sedans): $3,300–$5,000 (remanufactured unit: $2,400–$3,400; labor 8–12 hours: $900–$1,600; fluids/mounts/programming: $150–$350)
• 5-speed automatic, 3.0L V6 (sedan/coupe): $3,800–$5,700 (remanufactured unit: $2,800–$3,900; labor 9–12 hours: $1,000–$1,800; fluids/mounts/programming: $150–$350)
• 5-speed manual, 2.4L I4: $2,200–$3,800 (rebuild or good used unit: $1,200–$2,200; labor 6–10 hours: $700–$1,200; optional clutch kit/flieswheel: +$350–$700)
• 6-speed manual, 3.0L V6 (coupe only): $3,200–$5,000 (rebuild or good used unit: $1,800–$2,800; labor 8–11 hours: $900–$1,400; clutch kit/flywheel: +$450–$900)
• Used “yard” automatic (I4 or V6), installed: $1,800–$3,200 (unit: $700–$1,400; labor/fluids: $1,000–$1,800; risk of unknown history)
• New OEM automatic (where available): $5,800–$8,500 (new Honda unit $4,500–$6,500+; labor/fluids: $1,200–$2,000); note: new units for a 2006 may be limited or discontinued in many markets

These ranges assume typical shop rates ($110–$200/hour), regional parts pricing, and that no significant collateral damage is present. V6 automatics and the 6MT generally cost more to replace than I4/5MT due to parts availability and labor complexity.

What’s in the Bill: Parts, Labor, and Extras

Understanding the components of the estimate will help you compare quotes and spot upsells or omissions.

• Transmission unit: remanufactured, rebuilt, used, or new OEM
• Labor (remove/replace): usually 8–12 hours for automatics; 6–11 hours for manuals
• Fluids and seals: Honda ATF DW-1 or equivalent, manual gear oil, axle seals
• Programming and relearns: TCM/PCM updates or resets when applicable
• Related wear items: mounts, axles, cooler lines, and, for manuals, clutch/flywheel

A complete, transparent quote should itemize each of these. If programming or fluids are missing, expect add-ons at delivery.

Factors That Swing the Price

These variables explain why two shops can quote very different numbers for the same vehicle.

• Transmission type and engine: V6 and 6MT parts often cost more and can take longer to source
• Choice of unit: remanufactured typically costs more than a used yard unit but includes a stronger warranty
• Warranty length: 12 months/12,000 miles vs. 3 years/unlimited miles materially affects price
• Labor rates and regional costs: metro areas and dealerships trend higher than independents
• Extra repairs discovered during service: mounts, axles, cooler flushes, or a required clutch kit

When you compare quotes, align the warranty, parts type, and included extras to make an apples-to-apples decision.

Replace vs. Rebuild vs. Used: Pros and Cons

Picking the right approach balances budget, downtime, and risk tolerance.

• Remanufactured: Thoroughly overhauled with updated components; best warranty; mid-to-high cost; fastest path to reliability
• Rebuilt locally: Repaired to the failure; quality depends on shop; moderate cost; warranty varies
• Used (salvage): Cheapest upfront; unknown history; shorter warranty (often 30–90 days parts only); best for short-term ownership
• New OEM: Rare for older models and very expensive; longest coverage if available

For a 2006 Accord you plan to keep, a reputable remanufactured unit often provides the best value-risk balance.

How to Keep Costs Down—Without Cutting Corners

A few practical moves can trim the bill while preserving reliability.

• Get 2–3 quotes from independent transmission specialists and one dealer for baseline
• Ask for line-item breakdowns (unit cost, labor hours, fluids, programming, incidentals)
• Choose a reman with a nationwide warranty if you drive long distances
• If manual, replace the clutch and related parts while the transmission is out to avoid double labor later
• Confirm cooler flush or inline filter install for automatics to protect the replacement unit
• Verify software updates or relearns are included when required

Clarity on parts and warranty often saves money by preventing repeat labor or early failure.

When a Full Replacement Might Not Be Necessary

Before green-lighting a replacement, verify the diagnosis—some failures are fixable in-car.

• Fluid service: Wrong or degraded ATF can cause harsh shifts; drain-and-fill may restore function
• Solenoids/sensors: Faulty shift solenoids or speed sensors can mimic major failures
• Mounts and axles: Worn mounts or CV joints can cause clunks and vibrations mistaken for transmission issues
• Software: A PCM/TCM update or relearn can resolve certain drivability issues

A scan for manufacturer-specific codes, a road test, and basic checks can prevent unnecessary replacement costs.

What to Ask When You Call Shops

Arrive prepared so quotes are comparable and comprehensive.

• Is the unit remanufactured, rebuilt, used, or new? Who is the supplier?
• What’s the warranty term and is it parts-and-labor, nationwide, and transferable?
• How many labor hours are quoted, and what is your hourly rate?
• Are fluids, seals, programming, and cooler service included?
• What additional parts are commonly needed on a 2006 Accord, and at what cost?

Getting these answers in writing reduces surprises and helps you select the best value, not just the lowest sticker price.

Bottom Line

For a 2006 Honda Accord, plan on $3,300–$5,700 for an automatic and $2,200–$5,000 for a manual, depending on configuration, parts choice, and labor rates. A quality remanufactured unit with a solid warranty is usually the safest long-term bet; used units are cheapest but riskiest.

Does the 2006 Accord have transmission problems?

Short answer: The most common problems with the Honda Accord transmission include delayed shifting, slipping gears, transmission fluid leaks, transmission overheating, and warning lights/error codes.

How much is a transmission for a 2006 Honda Accord?

The average price for a 2006 Honda Accord Automatic Transmission Kit at Advance Auto Parts is around $527.79, with a range that starts at $426.99 and goes up to $594.99.

Is it worth it to replace a transmission?

Replacing a transmission is a significant expense, and its value depends on the vehicle’s overall condition, mileage, and the cost of repair versus the vehicle’s market value. It is often a worthwhile investment for well-maintained, modern vehicles with high potential for continued use, offering improved reliability and a longer lifespan. However, for older, high-mileage cars, it may be financially impractical, making replacement more worthwhile for a newer, high-value vehicle. 
When it is worth it:

• Vehicle Value: If the cost of replacement is significantly less than the vehicle’s market value, and the car is otherwise in good condition, replacement makes financial sense. 
• Vehicle Age and Condition: A newer vehicle with high mileage might be a good candidate for replacement, as it has a longer potential lifespan for continued use. 
• Improved Performance: A new or rebuilt transmission can restore performance, leading to smoother shifting, better fuel efficiency, and an improved driving experience. 
• Warranty: New transmissions often come with warranties, providing added peace of mind and financial security for the future. 

When it may not be worth it:

• Age and Mileage of the Car: If the vehicle is older, has high mileage, and other components are showing wear, investing in a transmission replacement might not be a wise long-term decision. 
• Cost vs. Value: If the replacement cost approaches or exceeds the vehicle’s value, selling the car for parts or as-is might be a more practical option. 
• Severity of Damage: Severe internal damage or a cracked casing may be too expensive to repair, making replacement less feasible. 

To make the right decision:

1. 1. Get a Diagnosis: Have a professional mechanic inspect the transmission to assess the extent of the damage and recommend repair or replacement. 
2. 2. Compare Costs: Obtain detailed cost estimates for both transmission repair and replacement to compare against the vehicle’s market value. 
3. 3. Consider Your Vehicle’s Future: Think about how many more years you expect to drive the car and whether the investment in a new transmission aligns with your plans. 
4. 4. Weigh New vs. Rebuilt: Consider a rebuilt transmission as a cost-effective alternative to a brand-new unit, especially for older or hard-to-find models. 

How much does it cost to put a transmission in a Honda Accord?

Honda transmission costs can vary from $1,800 to $3,400 for brand-new parts, with around $500 and $1,200 in labor costs alone.